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Fabrication and Characterization of Large Numerical Aperture, High-Resolution Optical Fiber Bundles Based on High-Contrast Pairs of Soft Glasses for Fluorescence Imaging

Morova, Berna; Bavili, Nima; Yaman, Onur; Yiğit, B.; Zeybel, Müjdat; Aydın, Musa; Doğan, B.; Kasztelanic, R.; Pysz, Dariusz; Buczynski, Ryszard; Kiraz, Alper (The Optical Society, 2019)

Fabrication and characterization of flexible optical fiber bundles (FBs) with inhouse synthesized high-index and low-index thermally matched glasses are presented. The FBs composed of around 15000 single-core fibers with ...

An LED-Based Super Resolution GPU Implemented Structured Illumination Microscope

Aydın, Musa; Uysallı, Yiğit; Özgönül, Ekin; Morova, Berna; Kiraz, Alper (SPIEDigital Library, 2020)

Fluorescence imaging of sub-cellular structures with sizes below the di raction limit is vital in understanding cellular processes. Relying on exciting the sample with di erent illumination patterns and image processing ...

Sinüzoidal Aydınlatma Desenleri Kullanılarak Frekans Uzayında Görüntü Yeniden Yapılandırma

Aydın, Musa; Kiraz, Alper; Uysallı, Yiğit; Özgönül, Ekin; Morova, Berna (IEEE, 2021)

Yapılandırılmış Aydınlatma Desenleri (Structured Illumination Patterns) mikroskobik görüntülemede, kırımın limitinin (diffraction limit) aşılarak süper çözünürlüklü görüntünün elde edilmesini sağlamak için kullanılan ...

A Deep Learning Model for Automated Segmentation of Fluorescence Cell images

Aydın, Musa; Kiraz, Berna; Eren, Furkan; Uysallı, Yiğit; Morova, Berna; Özcan, Selahattin Can; Acılan, Ceyda; Kiraz, Alper (IOP Publishing Ltd, 2021)

Deep learning techniques bring together key advantages in biomedical image segmentation. They speed up the process, increase the reproducibility, and reduce the workload in segmentation and classification. Deep learning ...

An LED-Based Structured Illumination Microscope Using A Digital Micromirror Device And GPU Accelerated Image Reconstruction

Aydın, Musa; Uysallı, Yiğit; Özgönül, Ekin; Morova, Berna; Tiryaki, Fatmanur; Karalar, Elif Nur Fırat; Doğan, Buket; Kiraz, Alper (PLOS, 2022)

When combined with computational approaches, fluorescence imaging becomes one of the most powerful tools in biomedical research. It is possible to achieve resolution figures beyond the diffraction limit, and improve the ...