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dc.contributor.authorYiğit, Buket
dc.contributor.authorÖzgönül, Ekin
dc.contributor.authorYaman, Ömer
dc.contributor.authorSipahioğlu, Tarık
dc.contributor.authorUlukan, Burge
dc.contributor.authorTaş, Yağmur Çetin
dc.contributor.authorMorova, Berna
dc.contributor.authorAydın, Musa
dc.contributor.authorUysallı, Yiğit
dc.contributor.authorDemirtaş, Elif
dc.contributor.authorErkan, Mert
dc.contributor.authorTellioğlu, Gürkan
dc.contributor.authorAtak, Dila
dc.contributor.authorÖzdemir, Yasemin Gürsoy
dc.contributor.authorKarahüseyinoğlu, Serçin
dc.contributor.authorYurdaydın, Cihan
dc.contributor.authorAkyıldız, Murat
dc.contributor.authorSheth, Abhishek
dc.contributor.authorAithal, Guruprasad Padur
dc.contributor.authorKırımlıoğlu, Hale
dc.contributor.authorDayangaç, Murat
dc.contributor.authorFerhanoğlu, Onur
dc.contributor.authorKiraz, Alper
dc.contributor.authorZeybel, Müjdat
dc.date.accessioned2025-07-16T12:18:53Z
dc.date.available2025-07-16T12:18:53Z
dc.date.issued2025en_US
dc.identifier.citationYİĞİT, Buket, Ekin ÖZGÖNÜL, Ömer YAMAN, Tarık SİPAHİOĞLU, Burge ULUKAN, Yağmur Çetin TAŞ, Berna MOROVA, Musa AYDIN, Yiğit UYSALLI, Elif DEMİRTAŞ, Mert ERKAN, Gürkan TELLİOĞLU, Dila ATAK, Yasemin Gürsoy ÖZDEMİR, Serçin KARAHÜSEYİNOĞLU, Cihan YURDAYDIN, Murat AKYILDIZ, Abhishek SHETH, Guruprasad Padur AİTHAL, Hale KIRIMLIOĞLU, Murat DAYANGAÇ, Onur FERHANOĞLU, Alper KİRAZ & Müjdat ZEYBEL. "Investigating Hepatic Fibrosis Heterogeneity by Threedimensional Imaging in Metabolic Dysfunction-Associated Steatotic Liver Disease". Scientific Reports, 15 (2025): 1-11.en_US
dc.identifier.urihttps://www.nature.com/articles/s41598-025-98680-y
dc.identifier.urihttps://hdl.handle.net/11352/5348
dc.description.abstractAlthough liver biopsy is a well-established technique to assess fibrosis it has several limitations, including invasive nature, semi-quantitative assessment methods, significant sampling and observer variability, making precise assessment of hepatic fibrosis challenging. Accurate and reliable modalities are crucial for clinical trials to characterize hepatic fibrosis monitorization effectively. We aimed to perform 3-dimensional imaging of optically transparent liver samples by light-sheet microscopy (LSM) to quantify extracellular matrix (ECM) proteins. Fifty-seven MASLD, thirty-eight chronic hepatitis patients and twelve healthy individuals were included. Liver tissues were cleared with a CLARITY method. 3D imaging of ECM was performed via the newly developed LSM. Collagen Proportionate Volume (CPV) and Elastin Proportionate Volume (EPV) values were calculated by analysis of over 200 sections per sample through morphometry. We have optimized a method which achieves transparency of liver tissues in advanced fibrotic stages of MASLD and optimized non-destructive slide-free fibrosis pathology of whole fresh and FFPE liver biopsy samples. Cut-off values for CPV and EPV were established for fibrotic stages. CPV and EPV analysis showed a considerable optical section heterogeneity resulting in a fibrosis stage of variance within the sample. Volumetric image analysis for fibrosis staging revealed that only 44% and 47% of optical sections would be staged the same for F3 and F4, respectively. For the first time, our findings demonstrate a novel method of analyzing 3D digital pathology of liver fibrosis using in-house LSM. Volumetric imaging of whole liver biopsy samples showed that fibrosis heterogeneity occurs even in different sections.en_US
dc.language.isoengen_US
dc.publisherNatureen_US
dc.relation.isversionof10.1038/s41598-025-98680-yen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectLiver Fibrosisen_US
dc.subjectSlide-Free Pathologyen_US
dc.subjectClarityen_US
dc.subject3D Imagingen_US
dc.subjectMaslden_US
dc.titleInvestigating Hepatic Fibrosis Heterogeneity by Threedimensional Imaging in Metabolic Dysfunction-Associated Steatotic Liver Diseaseen_US
dc.typearticleen_US
dc.relation.journalScientific Reportsen_US
dc.contributor.departmentFSM Vakıf Üniversitesi, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümüen_US
dc.identifier.volume15en_US
dc.identifier.startpage1en_US
dc.identifier.endpage11en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.contributor.institutionauthorAydın, Musa


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