Microbiome Signatures of Virulence in The Oral-Gut-Brain Axis Influence Parkinson’s Disease and Cognitive Decline Pathophysiology

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2025Author
Clasen, FrederickYıldırım, Süleyman
Arıkan, Muzaffer
Garcia-Guevara, Fernando
Hanoğlu, Lütfü
Yılmaz, Nesrin H.
Şen, Aysu
Çelik, Handan Kaya
Neslihan, Alagoz Aybala
Demir, Tuğçe Kahraman
Temel, Zeynep
Mardinoğlu, Adil
Moyes, David L.
Uhlen, Mathias
Shoaie, Saeed
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CLASEN, Frederick, Süleyman YILDIRIM, Muzaffer ARIKAN, Fernando GARCİA-GUAVARA, Lütfü HANOĞLU, Nesrin H. YILMAZ, Aysu ŞEN, Handan Kaya ÇELİK, Alagöz Aybala NESLİHAN, Tuğçe Kandemir DEMİR, Zeynep TEMEL, Adil MARDİNOĞLU, David L. MOYES, Mathias UHLEN & Saeed SHOAİE. "Microbiome Signatures of Virulence in The Oral-Gut-Brain Axis Influence Parkinson’s Disease and Cognitive Decline Pathophysiology". Taylor & Francis, 17.1 (2025): 1-22.Abstract
The human microbiome is increasingly recognized for its crucial role in the development and
progression of neurodegenerative diseases. While the gut-brain axis has been extensively studied,
the contribution of the oral microbiome and gut-oral tropism in neurodegeneration has been largely
overlooked. Cognitive impairment (CI) is common in neurodegenerative diseases and develops on
a spectrum. In Parkinson’s Disease (PD) patients, CI is one of the most common non-motor symptoms
but its mechanistic development across the spectrum remains unclear, complicating early diagnosis
of at-risk individuals. Here, we generated 228 shotgun metagenomics samples of the gut and oral
microbiomes across PD patients with mild cognitive impairment (PD-MCI) or dementia (PDD), and
a healthy cohort, to study the role of gut and oral microbiomes on CI in PD. In addition to revealing
compositional and functional signatures, the role of pathobionts, and dysregulated metabolic pathways
of the oral and gut microbiome in PD-MCI and PDD, we also revealed the importance of oralgut
translocation in increasing abundance of virulence factors in PD and CI. The oral-gut virulence
was further integrated with saliva metaproteomics and demonstrated their potential role in dysfunction
of host immunity and brain endothelial cells. Our findings highlight the significance of the oralgut-
brain axis and underscore its potential for discovering novel biomarkers for PD and CI.


















